STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STY0789Putative membrane protein; Similar to Escherichia coli 10.9 kDa protein in cydb-tolq intergenic region SW:YBGE_ECOLI (P37343) (97 aa) fasta scores: E(): 0, 86.7% id in 90 aa, and to Vibrio cholerae hypothetical protein Vc1841 vc1841 TR:Q9KR06 (EMBL:AE004260) (105 aa) fasta scores: E(): 1.2e-09, 38.5% id in 78 aa. (93 aa)    
Predicted Functional Partners:
STY3636
Lipopolysaccharide biosynthesis protein; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.772
smp
Putative membrane protein; Similar to Escherichia coli smp protein precursor SW:SMP_ECOLI (P18838) (214 aa) fasta scores: E(): 0, 91.1% id in 214 aa.
  
     0.767
STY2456
Conserved hypothetical protein; Orthologue of E. coli yejG (YEJG_ECOLI); Fasta hit to YEJG_ECOLI (114 aa), 90% identity in 114 aa overlap.
  
     0.766
ytfB
Similar to Escherichia coli hypothetical protein YtfB ytfB SW:YTFB_ECOLI (P39310) (212 aa) fasta scores: E(): 0, 85.8% id in 212 aa and to the carboxy terminal of Haemophilus influenzae opacity associated proteins OapA or HI0330 SW:OAPA_HAEIN (P44415) (431 aa) fasta scores: E(): 6.4e-05, 28.4% id in 148 aa.
  
     0.766
STY2157
Conserved hypothetical protein; Orthologue of E. coli yecF (YECF_ECOLI); Fasta hit to YECF_ECOLI (74 aa), 88% identity in 74 aa overlap.
  
     0.765
STY3811
Extracytoplasmic stress protein for protein-mediated toxicities; Similar to Escherichia coli periplasmic protein CpxP precursor SW:CPXP_ECOLI () (166 aa) fasta scores: E(): 0, 88.6% id in 166 aa. Contains a possible N-terminal signal sequence; Fasta hit to SPY_ECOLI (161 aa), 32% identity in 159 aa overlap.
  
     0.765
STY2116
Similar to Haemophilus influenzae hypothetical protein Hi1582/1581 hi1582/1581 SW:YECM_HAEIN (P44262; P44261) (191 aa) fasta scores: E(): 2.5e-21, 38.0% id in 184 aa; Orthologue of E. coli YECM_ECOLI; Fasta hit to YECM_ECOLI (188 aa), 85% identity in 188 aa overlap.
  
     0.762
STY3542
Conserved hypothetical protein; Fasta hit to YCFR_ECOLI (85 aa), 34% identity in 88 aa overlap; Fasta hit to YJFN_ECOLI (100 aa), 34% identity in 93 aa overlap; Fasta hit to YAHO_ECOLI (91 aa), 31% identity in 91 aa overlap; Fasta hit to YJFY_ECOLI (91 aa), 33% identity in 87 aa overlap; Fasta hit to YBIJ_ECOLI (86 aa), 47% identity in 88 aa overlap; Orthologue of E. coli YHCN_ECOLI; Fasta hit to YHCN_ECOLI (87 aa), 78% identity in 87 aa overlap.
  
     0.762
STY4213
Similar to Escherichia coli universal stress protein B UspB SW:USPB_ECOLI (P37632) (111 aa) fasta scores: E(): 0, 95.5% id in 111 aa. Predicted hydrophobic membrane spanning domains, integral membrane protein.
  
     0.762
STY1335
Conserved hypothetical protein; Orthologue of E. coli yciN (YCIN_ECOLI); Fasta hit to YCIN_ECOLI (83 aa), 93% identity in 83 aa overlap.
  
     0.761
Your Current Organism:
Salmonella enterica Typhi
NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18
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