STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STY3297Putative oxidoreductase; Orthologue of E. coli ordL (ORDL_ECOLI); Fasta hit to ORDL_ECOLI (426 aa), 36% identity in 412 aa overlap. (433 aa)    
Predicted Functional Partners:
STY3298
Similar to Escherichia coli phenylacetaldehyde dehydrogenase feaB SW:FEAB_ECOLI (P80668; P46884; P77637; O32557) (499 aa) fasta scores: E(): 0, 43.8% id in 495 aa.
  
  
 0.663
STY2963
Putative rubredoxin reductase; One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase.
  
 
 0.586
STY2912
4-aminobutyrate aminotransferase; Fasta hit to GSA_ECOLI (426 aa), 32% identity in 421 aa overlap; Fasta hit to ARGM_ECOLI (406 aa), 34% identity in 404 aa overlap; Fasta hit to ARGD_ECOLI (405 aa), 36% identity in 411 aa overlap; Fasta hit to BIOA_ECOLI (429 aa), 32% identity in 353 aa overlap; Fasta hit to GOAG_ECOLI (421 aa), 53% identity in 421 aa overlap; Orthologue of E. coli gabT (GABT_ECOLI); Fasta hit to GABT_ECOLI (426 aa), 89% identity in 426 aa overlap; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.578
STY3211
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
  
 
 0.570
STY3296
Hypothetical protein.
  
    0.567
STY3295
Weakly similar to a number of amino acid transporters e.g. Zymomonas mobilis ethanolamin permease eutP TR:Q9Z5U0 (EMBL:AF124349) (491 aa) fasta scores: E(): 6.9e-18, 26.7% id in 423 aa. Contains possible membrane spanning hydrophobic domains.
 
    0.543
STY3510
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB SW:GLTB_ECOLI (P09831) (1517 aa) fasta scores: E(): 0, 95.4% id in 1486 aa and to Pseudomonas aeruginosa glutamate synthase large subunit GltB TR:P95456 (EMBL:U81261) (1482 aa) fasta scores: E(): 0, 60.9% id in 1476 aa.
  
  
 0.536
STY0910
Putrescine-binding periplasmic protein precursor; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
   
 0.519
STY3238
Agmatine ureohydrolase; Catalyzes the formation of putrescine from agmatine. Belongs to the arginase family. Agmatinase subfamily.
 
  
 0.462
STY0912
Putrescine transport system permease protein PotH; Fasta hit to POTB_ECOLI (275 aa), 42% identity in 268 aa overlap; Orthologue of E. coli potH (POTH_ECOLI); Fasta hit to POTH_ECOLI (317 aa), 92% identity in 317 aa overlap.
 
    0.434
Your Current Organism:
Salmonella enterica Typhi
NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18
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