STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thrBHomoserine kinase; Identified by similarity to SP:P29364; match to protein family HMM PF01636; match to protein family HMM TIGR00938; Belongs to the pseudomonas-type ThrB family. (316 aa)    
Predicted Functional Partners:
hom
Homoserine dehydrogenase; Identified by similarity to SP:P29365; match to protein family HMM PF00742; match to protein family HMM PF01842; match to protein family HMM PF03447.
 
  
 0.923
thrH
Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR02137.
     
 0.919
PFL_3809
Homoserine dehydrogenase; Identified by match to protein family HMM PF00742; match to protein family HMM PF03447.
    
 0.917
thrC
Threonine synthase; Identified by similarity to SP:P29363; match to protein family HMM PF00291; match to protein family HMM TIGR00260.
    
 0.916
PFL_3811
Putative threonine synthase; Identified by similarity to GB:CAA82670.1; match to protein family HMM PF00291.
    
 0.916
ilvE
Branched-chain-amino-acid transaminase; Identified by match to protein family HMM PF01063; match to protein family HMM TIGR01123.
   
 
 0.820
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.812
PFL_0081
Conserved hypothetical protein.
 
    0.808
PFL_3470
Putative aminotransferase B; Identified by match to protein family HMM PF00155.
   
 
  0.807
cysD
O-acetylhomoserine sulfhydrylase; Identified by similarity to SP:O13326; match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326.
    
  0.805
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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