Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PFL_0100Conserved hypothetical protein; Identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056. (382 aa)    
Predicted Functional Partners:
PFL_0099
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.999
PFL_0098
Mammalian cell entry related domain protein; Identified by match to protein family HMM PF02470.
 
 0.997
ttg2A
Toluene tolerance ABC efflux transporter, ATP-binding protein; Identified by similarity to GB:AAD17957.1; match to protein family HMM PF00005.
 
 0.991
ttg2C
Toluene tolerance protein Ttg2C; Identified by similarity to GB:AAD17959.1; match to protein family HMM PF02470.
 
 0.990
PFL_0097
Putative lipoprotein.
 
  
 0.954
ttg2E
Toluene tolerance protein Ttg2E; Identified by match to protein family HMM PF01740.
  
 0.946
ttg2B
Toluene tolerance protein Ttg2B; Identified by similarity to GB:AAD17958.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056.
  
  
 
0.920
ttg2D
Toluene tolerance protein Ttg2D; Identified by similarity to GB:AAD17960.1; match to protein family HMM PF05494.
  
 
 0.899
PFL_0101
Putative membrane protein.
       0.676
PFL_1643
Putative anti-anti-sigma factor; Identified by match to protein family HMM PF01740.
   
 
 0.633
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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