STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_0247Polar amino acid ABC transporter, permease protein; Identified by similarity to SP:P0AFT4; match to protein family HMM PF00528; match to protein family HMM TIGR01726. (221 aa)    
Predicted Functional Partners:
PFL_0248
Polar amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P0AEM9; match to protein family HMM PF00497.
 0.998
PFL_0246
Polar amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P37774; match to protein family HMM PF00005.
 0.995
PFL_1041
Lysine-arginine-ornithine binding periplasmic protein; Identified by similarity to SP:P02911; match to protein family HMM PF00497; match to protein family HMM TIGR01096.
 
 0.977
PFL_2360
Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.
 
 0.963
PFL_5913
Periplasmic amino acid-binding protein, PAAT family; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.
 0.962
PFL_2198
Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.
 
 0.911
PFL_2284
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P37774; match to protein family HMM PF00005.
 
 0.892
PFL_0417
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P0AAG3; match to protein family HMM PF00005.
 
 0.886
PFL_2357
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P27675; match to protein family HMM PF00005.
 
 0.886
PFL_5021
Putative amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.
 
 0.882
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.