STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompRDNA-binding response regulator OmpR; Identified by similarity to SP:P03025; similarity to GB:AAS48175.1; match to protein family HMM PF00072; match to protein family HMM PF00486. (246 aa)    
Predicted Functional Partners:
envZ
Osmolarity sensor protein EnvZ; Identified by similarity to SP:P41406; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
 0.995
PFL_1106
Response regulator/EAL domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563.
  
 
 0.844
PFL_3148
Heavy metal sensor histidine kinase; Member of a two-component regulatory system.
 
 
 0.793
PFL_4996
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
 
 0.788
PFL_1752
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
 
 0.778
copS
Copper sensor histidine kinase; Member of a two-component regulatory system.
 
 
 0.777
PFL_1591
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
 
 0.769
rpeA
Sensor histidine kinase RpeA; Identified by similarity to GB:AAO43104.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
 
 0.763
PFL_4239
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
 
 0.755
PFL_4449
Sensor histidine kinase; Identified by similarity to SP:Q04804; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
 
 0.748
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.