STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livFHigh affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF; Identified by similarity to SP:P22731; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (238 aa)    
Predicted Functional Partners:
livM
High-affinity branched-chain amino acid ABC transporter, permease protein LivM; Identified by similarity to SP:P22729; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
livH
High-affinity branched-chain amino acid ABC transporter, permease protein LivH; Identified by similarity to SP:P0AEX7; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.996
braE
Branched-chain amino acid ABC transporter, permease protein BraE; Identified by similarity to SP:P21628; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.987
PFL_3676
Putative branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.978
PFL_2621
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.972
braD
Branched-chain amino acid ABC transporter, permease protein BraD; Identified by similarity to SP:P21627; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.971
PFL_3675
Putative branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.967
PFL_2620
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.964
livG
High affinity branched-chain amino acid ABC transporter, ATP-binding protein LivG; Identified by similarity to SP:P0A9S7; match to protein family HMM PF00005.
 
  
0.928
livJ
Branched-chain amino acid transport system substrate-binding protein; Identified by similarity to SP:P0AD96; match to protein family HMM PF01094.
 
  
 0.919
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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