STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_0643Iron-chelate uptake ABC transporter, FeCT family, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (336 aa)    
Predicted Functional Partners:
PFL_0645
Iron-chelate ABC transporter, FeCT family, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.983
PFL_0644
Iron-chelate ABC transporter, FeCT family, periplasmic iron-chelate-binding protein; Identified by match to protein family HMM PF01497.
 
 
 0.975
phuT
Hemin ABC transporter, periplasmic hemin-binding protein PhuT; See PMID: 10658665 for more information; identified by similarity to GB:AAC13287.1; match to protein family HMM PF01497.
 
 
 0.953
phuV
Hemin ABC transporter, ATP-binding protein PhuV; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
 
 0.948
fepC
Ferric enterobactin ABC transporter, ATP-binding protein FepC; Identified by similarity to SP:P23878; match to protein family HMM PF00005.
 
 
 0.925
PFL_3502
Iron-chelate uptake ABC transporter, FeCT family, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.907
PFL_5512
Putative periplasmic cobalamin-binding protein; Identified by match to protein family HMM PF01497.
 
 
 0.903
PFL_2238
Putative iron compound ABC transporter, iron compound-binding protein; Identified by match to protein family HMM PF01497.
 
 
 0.902
PFL_3500
Iron-chelate uptake ABC transporter, FeCT family, periplasmic iron-chelate-binding protein; Identified by match to protein family HMM PF01497.
 
 
 0.811
PFL_0646
TonB-dependent outermembrane receptor; Receptor; identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783.
     
 0.659
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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