STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aroP_2Aromatic amino acid transport protein AroP; Identified by similarity to SP:P15993; match to protein family HMM PF00324. (466 aa)    
Predicted Functional Partners:
antC
Anthranilate dioxygenase reductase; Identified by similarity to GB:AAC34815.1; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.
       0.587
braC
Branched-chain amino acid transport system substrate-binding protein; Identified by similarity to SP:P21175; match to protein family HMM PF01094.
      
 0.555
bkdA1
2-oxoisovalerate dehydrogenase E1 component, alpha subunit; Identified by similarity to SP:P09060; match to protein family HMM PF00676.
      
 0.553
antB
Anthranilate 1,2-dioxygenase, small subunit; Identified by similarity to GB:AAC34814.1; match to protein family HMM PF00866; match to protein family HMM TIGR03231.
       0.551
antA
Anthranilate 1,2-dioxygenase, large subunit; Identified by similarity to GB:AAC34813.1; match to protein family HMM PF00355; match to protein family HMM PF00848; match to protein family HMM TIGR03228.
       0.551
bkdR
Transcriptional regulator BkdR; Identified by similarity to SP:P42179; match to protein family HMM PF01037.
      
 0.532
braD
Branched-chain amino acid ABC transporter, permease protein BraD; Identified by similarity to SP:P21627; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
      
 0.531
PFL_0755
Identified by similarity to SP:P07775; match to protein family HMM PF00860; match to protein family HMM PF03594; match to protein family HMM TIGR00843.
       0.452
ilvE
Branched-chain-amino-acid transaminase; Identified by match to protein family HMM PF01063; match to protein family HMM TIGR01123.
      
 0.415
cbrB
Two-component response regulator CbrB; Identified by similarity to GB:BAB20867.1; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF07728.
      
 0.406
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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