STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_0796Identified by match to protein family HMM PF01042. (127 aa)    
Predicted Functional Partners:
PFL_0797
Conserved hypothetical protein.
 
     0.775
PFL_0798
Conserved hypothetical protein.
 
     0.775
PFL_0799
Transporter, BCCT family; Identified by match to protein family HMM PF02028; Belongs to the BCCT transporter (TC 2.A.15) family.
       0.723
PFL_6064
Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.
 
   
 0.616
PFL_2961
Identified by match to protein family HMM PF01042.
 
   
 0.591
PFL_0800
Identified by match to protein family HMM PF01244.
 
     0.542
PFL_0801
Identified by match to protein family HMM PF00171.
   
   0.501
PFL_3526
Identified by match to protein family HMM PF01042.
 
   
 0.421
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.