Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PFL_0807Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. (182 aa)    
Predicted Functional Partners:
PFL_2384
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
 
     0.625
PFL_2434
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.595
PFL_2910
Conserved hypothetical protein.
  
     0.488
PFL_1418
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.482
PFL_3320
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.442
PFL_4656
AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00668.
 
  
 0.401
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.400
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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