STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_1109Conserved hypothetical protein; Identified by match to protein family HMM TIGR02285. (236 aa)    
Predicted Functional Partners:
PFL_5240
Conserved hypothetical protein.
  
     0.692
PFL_5241
Conserved hypothetical protein.
  
    0.683
PFL_5239
Conserved hypothetical protein.
  
     0.681
PFL_5800
Conserved hypothetical protein.
  
     0.647
PFL_0554
HDOD domain protein; Identified by match to protein family HMM PF08668.
  
     0.634
PFL_1903
Conserved hypothetical protein.
  
     0.611
PFL_3229
ATP-dependent DNA helicase, UvrD/Rep family; Identified by match to protein family HMM PF00580.
  
     0.596
PFL_4290
CHAD domain protein; Identified by match to protein family HMM PF05235.
  
     0.584
PFL_5420
Conserved hypothetical protein.
  
     0.536
PFL_4491
Response regulator/TPR domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
  
 
   0.530
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.