node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PFL_5412 | PFL_5703 | PFL_5412 | PFL_5703 | Identified by match to protein family HMM PF00929. | Exonuclease; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | 0.940 |
PFL_5412 | dnaE | PFL_5412 | PFL_1191 | Identified by match to protein family HMM PF00929. | DNA polymerase III, alpha subunit; Identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | 0.964 |
PFL_5412 | dnaN | PFL_5412 | PFL_0002 | Identified by match to protein family HMM PF00929. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.974 |
PFL_5412 | dnaQ | PFL_5412 | PFL_3294 | Identified by match to protein family HMM PF00929. | DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | 0.918 |
PFL_5412 | dnaX | PFL_5412 | PFL_1904 | Identified by match to protein family HMM PF00929. | DNA polymerase III, gamma and tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.976 |
PFL_5412 | holA | PFL_5412 | PFL_5441 | Identified by match to protein family HMM PF00929. | DNA polymerase III, delta subunit; Identified by similarity to SP:P28630; match to protein family HMM PF06144; match to protein family HMM TIGR01128. | 0.956 |
PFL_5412 | holB | PFL_5412 | PFL_1802 | Identified by match to protein family HMM PF00929. | DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678. | 0.920 |
PFL_5412 | holC | PFL_5412 | PFL_1065 | Identified by match to protein family HMM PF00929. | DNA polymerase III, chi subunit; Identified by similarity to SP:P28905; match to protein family HMM PF04364. | 0.929 |
PFL_5703 | PFL_5412 | PFL_5703 | PFL_5412 | Exonuclease; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | Identified by match to protein family HMM PF00929. | 0.940 |
PFL_5703 | dnaE | PFL_5703 | PFL_1191 | Exonuclease; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | DNA polymerase III, alpha subunit; Identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | 0.924 |
PFL_5703 | dnaN | PFL_5703 | PFL_0002 | Exonuclease; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.939 |
PFL_5703 | dnaQ | PFL_5703 | PFL_3294 | Exonuclease; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | 0.927 |
PFL_5703 | dnaX | PFL_5703 | PFL_1904 | Exonuclease; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | DNA polymerase III, gamma and tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.942 |
PFL_5703 | holA | PFL_5703 | PFL_5441 | Exonuclease; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | DNA polymerase III, delta subunit; Identified by similarity to SP:P28630; match to protein family HMM PF06144; match to protein family HMM TIGR01128. | 0.938 |
PFL_5703 | holB | PFL_5703 | PFL_1802 | Exonuclease; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678. | 0.921 |
PFL_5703 | holC | PFL_5703 | PFL_1065 | Exonuclease; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | DNA polymerase III, chi subunit; Identified by similarity to SP:P28905; match to protein family HMM PF04364. | 0.900 |
dnaE | PFL_5412 | PFL_1191 | PFL_5412 | DNA polymerase III, alpha subunit; Identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | Identified by match to protein family HMM PF00929. | 0.964 |
dnaE | PFL_5703 | PFL_1191 | PFL_5703 | DNA polymerase III, alpha subunit; Identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | Exonuclease; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | 0.924 |
dnaE | dnaN | PFL_1191 | PFL_0002 | DNA polymerase III, alpha subunit; Identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.979 |
dnaE | dnaQ | PFL_1191 | PFL_3294 | DNA polymerase III, alpha subunit; Identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | 0.973 |