STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_1334Integral membrane protein, DUF6 family; Identified by match to protein family HMM PF00892. (294 aa)    
Predicted Functional Partners:
emhR
Transcriptional regulator EmhR; Identified by similarity to GB:AAQ92183.1; match to protein family HMM PF00440; match to protein family HMM PF08361.
       0.501
PFL_6171
Cobalamin synthesis protein/P47K family protein; Identified by match to protein family HMM PF02492.
   
   0.476
PFL_5529
Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
   
    0.457
PFL_6173
Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.
   
   0.422
folE2-2
Conserved hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
    0.405
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.