STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_1405Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659. (302 aa)    
Predicted Functional Partners:
PFL_1404
Conserved hypothetical protein.
 
    0.737
PFL_4722
Putative S-(hydroxymethyl)glutathione dehydrogenase; Identified by similarity to SP:P47734; match to protein family HMM PF00107; match to protein family HMM PF08240.
 
  
 0.677
nuoD
NADH-quinone oxidoreductase, C/D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 
 0.668
PFL_3415
Putative DNA topoisomerase I.
  
 
   0.656
rzxA
Polyketide synthase/nonribosomal peptide synthetase hybrid RzxA; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM PF08415.
  
 0.616
PFL_4742
Putative S-(hydroxymethyl)glutathione dehydrogenase; Identified by similarity to SP:P47734; match to protein family HMM PF00107; match to protein family HMM PF08240.
 
  
 0.580
PFL_4656
AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00668.
  
 
 0.563
PFL_6269
Hypothetical protein.
 
  
 0.486
PFL_4743
Conserved hypothetical protein; Identified by match to protein family HMM PF01904.
  
    0.485
treZ
4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402.
  
  
 0.464
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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