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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_1663Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535. (1172 aa)    
Predicted Functional Partners:
PFL_5494
Putative ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.760
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.757
PFL_1662
Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.
 
  
 0.751
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
  
 0.722
rfbB
dTDP-glucose 4,6-dehydratase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.702
PFL_2032
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
 
  
 0.701
PFL_5495
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
 
  
 0.699
PFL_2026
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00534; match to protein family HMM PF00535.
 
 
0.698
pslA
Putative glycosyltransferase PslA; See Byrd et. al. (PMID: 19659934) for more information; identified by similarity to GB:AAG05619.1; match to protein family HMM PF02397; match to protein family HMM TIGR03023; match to protein family HMM TIGR03025.
 
  
 0.671
algA
Alginate biosynthesis protein AlgA; Identified by similarity to SP:P07874; match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.669
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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