Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ccoO_1Cytochrome c oxidase, cbb3-type, subunit II; Identified by similarity to GB:AAM76065.1; match to protein family HMM PF02433; match to protein family HMM TIGR00781. (202 aa)    
Predicted Functional Partners:
ccoN_1
Cytochrome c oxidase, cbb3-type, subunit I; Identified by similarity to SP:P98055; match to protein family HMM PF00115; match to protein family HMM TIGR00780; Belongs to the heme-copper respiratory oxidase family.
 
 0.999
ccoN_2
Cytochrome c oxidase, cbb3-type, subunit I; Identified by similarity to SP:P98055; match to protein family HMM PF00115; match to protein family HMM TIGR00780; Belongs to the heme-copper respiratory oxidase family.
 
 0.998
ccoP_1
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 
 0.997
ccoN_3
Cytochrome c oxidase, cbb3-type, subunit I; Identified by similarity to GB:AAC72071.1; match to protein family HMM PF00115; match to protein family HMM TIGR00780; Belongs to the heme-copper respiratory oxidase family.
 
 0.997
ccoP_2
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 
 0.987
ccoG_1
Cytochrome c oxidase accessory protein CcoG; Identified by match to protein family HMM TIGR02745.
 
  
 0.966
ccoQ_1
Cytochrome c oxidase, cbb3-type, CcoQ subunit; Identified by match to protein family HMM PF05545.
  
  
 0.952
ccoG_2
Cytochrome c oxidase accessory protein CcoG; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR02745.
 
  
 0.947
ctaC
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.906
ccoO_2
Cytochrome c oxidase, cbb3-type, subunit II; Identified by similarity to GB:AAM76065.1; match to protein family HMM PF02433; match to protein family HMM TIGR00781.
  
  
 
0.900
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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