Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PFL_1998Conserved hypothetical protein. (331 aa)    
Predicted Functional Partners:
PFL_2002
Phage baseplate assembly V family protein; Identified by match to protein family HMM PF04717; match to protein family HMM TIGR01644.
 
     0.938
PFL_1993
Phage terminase, large subunit, GpA family; Identified by match to protein family HMM PF05876.
 
     0.921
PFL_1995
Portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.
 
     0.921
PFL_1997
Conserved hypothetical protein.
 
     0.920
PFL_1996
ATP-dependent Clp protease family protein; Identified by match to protein family HMM PF00574; Belongs to the peptidase S14 family.
 
     0.872
PFL_2005
Baseplate J-like protein; Identified by match to protein family HMM PF04865.
 
     0.858
PFL_2000
Conserved hypothetical protein.
       0.857
PFL_2001
Conserved hypothetical protein.
       0.857
PFL_2004
Hypothetical protein; Identified by glimmer; putative.
 
     0.855
PFL_1992
Conserved hypothetical protein.
 
     0.839
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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