Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PFL_2136Transporter, major facilitator family; Identified by match to protein family HMM PF07690. (411 aa)    
Predicted Functional Partners:
PFL_2135
Conserved hypothetical protein.
       0.604
acpA
Acid phosphatase AcpA; Identified by similarity to GB:AAF77194.1; match to protein family HMM PF04185; match to protein family HMM TIGR01409; match to protein family HMM TIGR03397.
  
     0.569
PFL_2134
Transporter, major facilitator family; Identified by match to protein family HMM PF07690.
       0.546
PFL_6247
Conserved hypothetical protein.
  
     0.456
PFL_2133
Transcriptional regulator, LysR family; Identified by similarity to SP:P77559; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
       0.443
PFL_4129
Conserved hypothetical protein; Identified by similarity to GB:CAD14235.1.
  
     0.408
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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