Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PFL_2255 | PFL_2379 | PFL_2255 | PFL_2379 | Identified by match to protein family HMM PF00756; match to protein family HMM PF02230. | Conserved hypothetical protein. | 0.529 |
PFL_2255 | estB | PFL_2255 | PFL_1047 | Identified by match to protein family HMM PF00756; match to protein family HMM PF02230. | Carboxylesterase 2; Identified by match to protein family HMM PF02230. | 0.712 |
PFL_2378 | PFL_2379 | PFL_2378 | PFL_2379 | Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF06719. | Conserved hypothetical protein. | 0.508 |
PFL_2379 | PFL_2255 | PFL_2379 | PFL_2255 | Conserved hypothetical protein. | Identified by match to protein family HMM PF00756; match to protein family HMM PF02230. | 0.529 |
PFL_2379 | PFL_2378 | PFL_2379 | PFL_2378 | Conserved hypothetical protein. | Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF06719. | 0.508 |
PFL_2379 | estB | PFL_2379 | PFL_1047 | Conserved hypothetical protein. | Carboxylesterase 2; Identified by match to protein family HMM PF02230. | 0.529 |
PFL_2379 | fruK | PFL_2379 | PFL_0860 | Conserved hypothetical protein. | 1-phosphofructokinase; Identified by similarity to SP:P0AEW9; match to protein family HMM PF00294; match to protein family HMM TIGR03168; Belongs to the carbohydrate kinase PfkB family. | 0.487 |
estB | PFL_2255 | PFL_1047 | PFL_2255 | Carboxylesterase 2; Identified by match to protein family HMM PF02230. | Identified by match to protein family HMM PF00756; match to protein family HMM PF02230. | 0.712 |
estB | PFL_2379 | PFL_1047 | PFL_2379 | Carboxylesterase 2; Identified by match to protein family HMM PF02230. | Conserved hypothetical protein. | 0.529 |
fruK | PFL_2379 | PFL_0860 | PFL_2379 | 1-phosphofructokinase; Identified by similarity to SP:P0AEW9; match to protein family HMM PF00294; match to protein family HMM TIGR03168; Belongs to the carbohydrate kinase PfkB family. | Conserved hypothetical protein. | 0.487 |