Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PFL_2431 | gltB | PFL_2431 | PFL_0453 | Transporter, major facilitator family; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. | Glutamate synthase, large subunit; Identified by similarity to SP:P09831; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898. | 0.414 |
PFL_2431 | lhgO | PFL_2431 | PFL_2432 | Transporter, major facilitator family; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. | L-2-hydroxyglutarate oxidase; Identified by similarity to SP:P37339; match to protein family HMM PF01266. | 0.519 |
PFL_2433 | lhgO | PFL_2433 | PFL_2432 | Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729. | L-2-hydroxyglutarate oxidase; Identified by similarity to SP:P37339; match to protein family HMM PF01266. | 0.550 |
PFL_4801 | gltB | PFL_4801 | PFL_0453 | Putative fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | Glutamate synthase, large subunit; Identified by similarity to SP:P09831; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898. | 0.439 |
PFL_4801 | lhgO | PFL_4801 | PFL_2432 | Putative fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | L-2-hydroxyglutarate oxidase; Identified by similarity to SP:P37339; match to protein family HMM PF01266. | 0.400 |
gltB | PFL_2431 | PFL_0453 | PFL_2431 | Glutamate synthase, large subunit; Identified by similarity to SP:P09831; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898. | Transporter, major facilitator family; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. | 0.414 |
gltB | PFL_4801 | PFL_0453 | PFL_4801 | Glutamate synthase, large subunit; Identified by similarity to SP:P09831; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898. | Putative fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.439 |
gltB | lhgO | PFL_0453 | PFL_2432 | Glutamate synthase, large subunit; Identified by similarity to SP:P09831; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898. | L-2-hydroxyglutarate oxidase; Identified by similarity to SP:P37339; match to protein family HMM PF01266. | 0.486 |
lhgO | PFL_2431 | PFL_2432 | PFL_2431 | L-2-hydroxyglutarate oxidase; Identified by similarity to SP:P37339; match to protein family HMM PF01266. | Transporter, major facilitator family; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. | 0.519 |
lhgO | PFL_2433 | PFL_2432 | PFL_2433 | L-2-hydroxyglutarate oxidase; Identified by similarity to SP:P37339; match to protein family HMM PF01266. | Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729. | 0.550 |
lhgO | PFL_4801 | PFL_2432 | PFL_4801 | L-2-hydroxyglutarate oxidase; Identified by similarity to SP:P37339; match to protein family HMM PF01266. | Putative fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.400 |
lhgO | gltB | PFL_2432 | PFL_0453 | L-2-hydroxyglutarate oxidase; Identified by similarity to SP:P37339; match to protein family HMM PF01266. | Glutamate synthase, large subunit; Identified by similarity to SP:P09831; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898. | 0.486 |