STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_2723Putative choline ABC transporter, periplasmic binding protein; Identified by match to protein family HMM PF04069; match to protein family HMM TIGR03414. (313 aa)    
Predicted Functional Partners:
choV
Choline ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01186; match to protein family HMM TIGR03415.
 
 0.981
hisV
Histidine ABC transporter, ATP-binding protein; Identified by similarity to GB:AAF78099.1; match to protein family HMM PF00005.
 
 0.979
choW
Choline ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR03416.
 
 0.978
hisW
Histidine ABC transporter, permease protein; Identified by similarity to GB:AAF78098.1; match to protein family HMM PF00528.
 
 0.973
PFL_2553
Identified by match to protein family HMM PF00005; match to protein family HMM PF00528.
 
 0.942
PFL_2554
ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF04069.
  
  
  0.681
PFL_2722
Putative triacylglycerol lipase; Identified by match to protein family HMM PF07859.
     
 0.625
PFL_2603
ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF04069.
  
  
  0.569
hisX
Histidine ABC transporter, periplasmic histidine-binding protein; Identified by similarity to GB:AAF78097.1; match to protein family HMM PF04069.
  
  
  0.532
betI
Transcriptional repressor BetI; Repressor involved in the biosynthesis of the osmoprotectant glycine betaine. It represses transcription of the choline transporter BetT and the genes of BetAB involved in the synthesis of glycine betaine (By similarity).
  
     0.513
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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