STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_2844Conserved hypothetical protein. (442 aa)    
Predicted Functional Partners:
PFL_2845
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00092; match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
 0.968
PFL_2848
Conserved hypothetical protein; Identified by similarity to GB:CAE33222.1; match to protein family HMM PF01882.
 
  
 0.964
batA
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
 
   
 0.950
PFL_2847
Conserved hypothetical protein.
 
   
 0.948
PFL_2843
Nonspecific acid phosphatase; Identified by similarity to GB:AAK39518.1.
 
     0.942
PFL_2842
Identified by match to protein family HMM PF00884.
 
     0.887
PFL_2849
ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.
 
  
 0.878
PFL_2735
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
 0.851
PFL_2738
Conserved hypothetical protein; Identified by match to protein family HMM PF01882.
 
  
 0.824
PFL_2736
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
 
   
 0.754
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.