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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_3003Conserved hypothetical protein. (148 aa)    
Predicted Functional Partners:
PFL_3002
Conserved hypothetical protein.
 
  
 0.977
PFL_3001
Conserved hypothetical protein.
 
  
 0.964
PFL_3004
Type VI secretion system Vgr family protein; Identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361.
 
  
 0.944
PFL_3000
Conserved hypothetical protein.
 
  
 0.942
PFL_2998
Conserved hypothetical protein; Identified by match to protein family HMM TIGR02270.
 
  
 0.940
PFL_2999
Conserved hypothetical protein.
 
  
 0.910
vgrG
Type VI secretion protein VgrG; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03481.1; match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361.
 
  
 0.756
tssE
Type VI secretion protein TssE; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03477.1; match to protein family HMM PF04965; match to protein family HMM TIGR03357.
 
    0.748
tssG
Type VI secretion protein TssG; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03479.1; match to protein family HMM PF06996; match to protein family HMM TIGR03347.
 
    0.733
tssF
Type VI secretion protein TssF; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03478.1; match to protein family HMM PF05947; match to protein family HMM TIGR03359.
 
    0.727
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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