STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtlFPolyol ABC transporter, permease protein MtlF; Identified by similarity to GB:AAC04469.1; match to protein family HMM PF00528. (308 aa)    
Predicted Functional Partners:
mtlG
Polyol ABC transporter, permease protein MtlG; Identified by similarity to GB:AAC04470.1; match to protein family HMM PF00528.
 0.998
mtlE
Polyol ABC transporter, periplasmic polyol-binding protein MtlE; Identified by similarity to GB:AAC04468.1; match to protein family HMM PF01547.
 
 0.997
mtlK
Polyol ABC transporter, ATP-binding protein MtlK; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.
 
 0.997
PFL_4614
Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.
 
 0.992
PFL_4615
Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.956
mtlD
Polyol dehydrogenase MtlD; Identified by similarity to GB:AAC04472.1; match to protein family HMM PF01232; match to protein family HMM PF08125; Belongs to the mannitol dehydrogenase family.
 
    0.882
PFL_4617
Putative sugar ABC transporter, periplasmic sugar-binding protein; Identified by similarity to SP:O06875; match to protein family HMM PF01547.
 
 
 0.859
mtlZ
Fructokinase; Identified by similarity to GB:AAC04474.1; match to protein family HMM PF00294; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.740
mtlY
Xylulokinase; Identified by similarity to GB:AAC04473.1; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312.
 
   
 0.666
nagF
PTS system, N-acetylglucosamine-specific IIA component; Identified by similarity to GB:AAG07147.1; match to protein family HMM PF00358; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR00830; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417.
   
 
 0.603
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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