Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
pspBSerine protease B; Identified by similarity to GB:ABB55359.1; match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601. (1038 aa)    
Predicted Functional Partners:
pueA
Identified by similarity to GB:ABM54447.1; match to protein family HMM PF00353; match to protein family HMM PF01764.
 
  
 0.834
pueB
Identified by similarity to GB:ABM54446.1; match to protein family HMM PF00353; match to protein family HMM PF01764.
 
  
 0.787
PFL_2761
Identified by match to protein family HMM PF05860; match to protein family HMM TIGR01901.
 
  
 0.777
tonB6
Periplasmic energy transduction protein TonB6; Identified by match to protein family HMM TIGR01352.
 
 
 0.755
aprX
Metallopeptidase AprX; Identified by similarity to GB:ABY65932.1; match to protein family HMM PF00353; match to protein family HMM PF00413; match to protein family HMM PF08548.
 
  
 0.754
PFL_2820
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF08479.
 
  
 0.742
aprF
Outer membrane protein; Identified by similarity to GB:AAF87592.1; similarity to GB:ABM54445.1; match to protein family HMM PF02321; match to protein family HMM TIGR01844.
 
  
 0.742
pspA
Serine protease A; Identified by similarity to GB:ABB55358.1; match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601.
 
   
0.735
PFL_2745
Secretin and TonB N terminus short domain protein; Identified by match to protein family HMM PF07660.
 
 
 0.723
pgaA
Biofilm PGA synthesis protein PgaA; Identified by similarity to SP:P69434; match to protein family HMM PF00515; match to protein family HMM PF07719.
 
    0.720
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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