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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspBSerine protease B; Identified by similarity to GB:ABB55359.1; match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601. (1038 aa)    
Predicted Functional Partners:
pueA
Identified by similarity to GB:ABM54447.1; match to protein family HMM PF00353; match to protein family HMM PF01764.
 
  
 0.826
PFL_2761
Identified by match to protein family HMM PF05860; match to protein family HMM TIGR01901.
 
  
 0.779
pueB
Identified by similarity to GB:ABM54446.1; match to protein family HMM PF00353; match to protein family HMM PF01764.
 
  
 0.779
pspA
Serine protease A; Identified by similarity to GB:ABB55358.1; match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601.
 
   
0.742
PFL_0316
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
 
 0.731
aprF
Outer membrane protein; Identified by similarity to GB:AAF87592.1; similarity to GB:ABM54445.1; match to protein family HMM PF02321; match to protein family HMM TIGR01844.
 
  
 0.729
PFL_2820
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF08479.
 
  
 0.727
tonB6
Periplasmic energy transduction protein TonB6; Identified by match to protein family HMM TIGR01352.
 
  
 0.722
pgaA
Biofilm PGA synthesis protein PgaA; Identified by similarity to SP:P69434; match to protein family HMM PF00515; match to protein family HMM PF07719.
 
    0.718
PFL_5874
Conserved hypothetical protein.
 
  
 0.712
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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