STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pueBIdentified by similarity to GB:ABM54446.1; match to protein family HMM PF00353; match to protein family HMM PF01764. (561 aa)    
Predicted Functional Partners:
aprF
Outer membrane protein; Identified by similarity to GB:AAF87592.1; similarity to GB:ABM54445.1; match to protein family HMM PF02321; match to protein family HMM TIGR01844.
 
  
 0.834
aprA
Extracellular alkaline metalloprotease AprA; Identified by similarity to SP:Q03023; similarity to GB:AAP44489.1; match to protein family HMM PF00353; match to protein family HMM PF00413; match to protein family HMM PF08548.
 
     0.816
PFL_3764
Phage head morphogenesis protein, SPP1 gp7 family; Identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641.
 
 
   0.809
pspA
Serine protease A; Identified by similarity to GB:ABB55358.1; match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601.
 
  
 0.804
pspB
Serine protease B; Identified by similarity to GB:ABB55359.1; match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601.
 
  
 0.787
PFL_3209
Protease inhibitor Inh; Identified by match to protein family HMM PF02974.
  
 
 0.768
aprE
Membrane fusion protein; Identified by similarity to GB:AAF87591.1; similarity to GB:ABM54444.1; match to protein family HMM PF00529; match to protein family HMM TIGR01843.
 
  
 0.767
PFL_4904
Conserved hypothetical protein.
  
     0.744
PFL_5874
Conserved hypothetical protein.
  
   
 0.743
aprX
Metallopeptidase AprX; Identified by similarity to GB:ABY65932.1; match to protein family HMM PF00353; match to protein family HMM PF00413; match to protein family HMM PF08548.
 
     0.739
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.