Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aprEMembrane fusion protein; Identified by similarity to GB:AAF87591.1; similarity to GB:ABM54444.1; match to protein family HMM PF00529; match to protein family HMM TIGR01843. (438 aa)    
Predicted Functional Partners:
aprD
ABC transporter; Identified by similarity to GB:AAF87590.1; similarity to GB:ABB55357.1; match to protein family HMM PF00005; match to protein family HMM TIGR01842.
 
  
 0.975
aprF
Outer membrane protein; Identified by similarity to GB:AAF87592.1; similarity to GB:ABM54445.1; match to protein family HMM PF02321; match to protein family HMM TIGR01844.
 
 
 0.964
hasD
Type 1 secretion system ATPase HasD; Identified by similarity to GB:BAA88492.1; match to protein family HMM PF00005; match to protein family HMM TIGR01842.
 
  
 0.924
PFL_0135
Type I secretion system ATPase; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03375.
 
 
 0.879
aprA
Extracellular alkaline metalloprotease AprA; Identified by similarity to SP:Q03023; similarity to GB:AAP44489.1; match to protein family HMM PF00353; match to protein family HMM PF00413; match to protein family HMM PF08548.
 
  
 0.835
aprX
Metallopeptidase AprX; Identified by similarity to GB:ABY65932.1; match to protein family HMM PF00353; match to protein family HMM PF00413; match to protein family HMM PF08548.
 
  
 0.831
PFL_0134
Type I secretion outer membrane protein, TolC family; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844.
 
 
 0.771
fitC
Type I secretion system ATPase FitC; See Pechy-Tarr et. al. (PMID: 18484997) for more information; identified by similarity to GB:ABY91229.1; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.
 
 
 0.769
pueB
Identified by similarity to GB:ABM54446.1; match to protein family HMM PF00353; match to protein family HMM PF01764.
 
  
 0.767
fitA
Type I secretion system ATPase FitA; Identified by similarity to GB:ABY91227.1; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.
 
 
 0.764
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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