STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_3219Aminotransferase, class III; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (444 aa)    
Predicted Functional Partners:
PFL_3467
Aminotransferase, class III; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.913
PFL_5927
Aminotransferase; Identified by similarity to GB:AAK15486.1; match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.909
speC
Ornithine decarboxylase; Identified by similarity to GB:AAG07907.1; match to protein family HMM PF00278; match to protein family HMM PF02784; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
     
 0.905
aguB
N-carbamoylputrescine amidase; Identified by similarity to GB:AAG03682.1; match to protein family HMM PF00795; match to protein family HMM TIGR03381.
    
 0.904
xylC
Benzaldehyde dehydrogenase; Identified by similarity to SP:P43503; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 
 0.903
PFL_3648
Identified by similarity to GB:AAK18072.1; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 
 0.903
PFL_6046
Identified by similarity to SP:P23883; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 
 0.903
pcd
Piperideine-6-carboxylate dehydrogenase; Identified by similarity to GB:BAB19801.1; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 
 0.902
PFL_2841
Identified by match to protein family HMM PF01564.
     
  0.900
bioD
Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
  
 0.705
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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