STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_3238Identified by match to protein family HMM PF01306; match to protein family HMM PF07690; match to protein family HMM TIGR00882. (429 aa)    
Predicted Functional Partners:
scrB
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.948
PFL_3236
Transcriptional regulator, LacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
 
   
 0.898
scrY
Sucrose porin ScrY; Identified by similarity to SP:P22340; match to protein family HMM PF02264.
 
   
 0.868
cobA
Siroheme synthase/uroporphyrinogen-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
  
  
 0.644
PFL_2999
Conserved hypothetical protein.
  
     0.531
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:P09831; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
  
   
 0.475
PFL_3083
Putative lipopolysaccharide biosynthesis protein.
  
     0.470
PFL_3089
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943; match to protein family HMM PF03023.
  
   
 0.456
hmp
Flavohemoprotein; Identified by similarity to SP:P24232; match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970; Belongs to the globin family.
     
 0.437
PFL_3085
Identified by match to protein family HMM PF04932.
  
     0.407
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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