STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_3253Conserved hypothetical protein. (432 aa)    
Predicted Functional Partners:
PFL_3252
Response regulator; Identified by match to protein family HMM PF00072.
  
   0.633
pslF
Putative glycosyltransferase PslF; See Byrd et. al. (PMID: 19659934) for more information; identified by similarity to GB:AAG05624.1; match to protein family HMM PF00534.
  
  
 0.625
pslE
Polysaccharide biosynthesis/export protein PslE; See Byrd et. al. (PMID: 19659934) for more information; identified by similarity to GB:AAG05623.1; match to protein family HMM PF02706.
  
  
 0.608
pslC
Putative glycosyltransferase PslC; Identified by similarity to GB:AAG05621.1; match to protein family HMM PF00535.
  
  
 0.561
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.538
treZ
4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402.
   
 0.538
PFL_3082
Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.
  
  
 0.520
pslD
Polysaccharide biosynthesis/export protein PslD; See Byrd et. al. (PMID: 19659934) for more information; identified by similarity to GB:AAG05622.1; match to protein family HMM PF02563.
  
  
 0.520
pslJ
Membrane protein PslJ; See Byrd et. al. (PMID: 19659934) for more information; identified by similarity to GB:AAG05628.1.
  
  
 0.504
mtlR
Transcriptional activator MtlR; Identified by similarity to GB:AAC34292.1; match to protein family HMM PF00165.
       0.483
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.