PFL_3289 protein (Pseudomonas protegens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PFL_3289

Flavin reductase; Identified by match to protein family HMM PF03358. (185 aa)

Predicted Functional Partners:

arsB-2

0.584

PFL_3609

0.550

PFL_3290

0.532

pltM

0.406

pltZ

0.406

pltA

0.402

PFL_4910

0.402

Your Current Organism:

Pseudomonas protegens

NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PFL_3289	PFL_3290	PFL_3289	PFL_3290	Flavin reductase; Identified by match to protein family HMM PF03358.	Conserved hypothetical protein.	0.532
PFL_3289	PFL_3609	PFL_3289	PFL_3609	Flavin reductase; Identified by match to protein family HMM PF03358.	Flavin reductase-like protein; Identified by similarity to SP:P54990; match to protein family HMM PF01613.	0.550
PFL_3289	PFL_4910	PFL_3289	PFL_4910	Flavin reductase; Identified by match to protein family HMM PF03358.	Putative membrane protein.	0.402
PFL_3289	arsB-2	PFL_3289	PFL_3288	Flavin reductase; Identified by match to protein family HMM PF03358.	Arsenical pump membrane protein; Involved in arsenical resistance. Thought to form the channel of an arsenite pump; Belongs to the ArsB family.	0.584
PFL_3289	pltA	PFL_3289	PFL_2787	Flavin reductase; Identified by match to protein family HMM PF03358.	FADH2-dependent halogenase PltA; Previously identified and sequenced (PMID: 10094695 Nowak-Thompson et al. 1999, PMID: 16162666 Dorrestein et al. 2005); identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820.	0.402
PFL_3289	pltM	PFL_3289	PFL_2784	Flavin reductase; Identified by match to protein family HMM PF03358.	Halogenase PltM; Previously identified and sequenced (PMID: 10094695 Nowak-Thompson et al. 1999); identified by match to protein family HMM PF01266; match to protein family HMM PF04820.	0.406
PFL_3289	pltZ	PFL_3289	PFL_2794	Flavin reductase; Identified by match to protein family HMM PF03358.	Transcriptional regulator PltZ; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005); identified by similarity to GB:AAQ90179.1; match to protein family HMM PF00440; match to protein family HMM PF09209.	0.406
PFL_3290	PFL_3289	PFL_3290	PFL_3289	Conserved hypothetical protein.	Flavin reductase; Identified by match to protein family HMM PF03358.	0.532
PFL_3609	PFL_3289	PFL_3609	PFL_3289	Flavin reductase-like protein; Identified by similarity to SP:P54990; match to protein family HMM PF01613.	Flavin reductase; Identified by match to protein family HMM PF03358.	0.550
PFL_3609	pltM	PFL_3609	PFL_2784	Flavin reductase-like protein; Identified by similarity to SP:P54990; match to protein family HMM PF01613.	Halogenase PltM; Previously identified and sequenced (PMID: 10094695 Nowak-Thompson et al. 1999); identified by match to protein family HMM PF01266; match to protein family HMM PF04820.	0.436
PFL_3609	pltZ	PFL_3609	PFL_2794	Flavin reductase-like protein; Identified by similarity to SP:P54990; match to protein family HMM PF01613.	Transcriptional regulator PltZ; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005); identified by similarity to GB:AAQ90179.1; match to protein family HMM PF00440; match to protein family HMM PF09209.	0.406
PFL_4910	PFL_3289	PFL_4910	PFL_3289	Putative membrane protein.	Flavin reductase; Identified by match to protein family HMM PF03358.	0.402
arsB-2	PFL_3289	PFL_3288	PFL_3289	Arsenical pump membrane protein; Involved in arsenical resistance. Thought to form the channel of an arsenite pump; Belongs to the ArsB family.	Flavin reductase; Identified by match to protein family HMM PF03358.	0.584
pltA	PFL_3289	PFL_2787	PFL_3289	FADH2-dependent halogenase PltA; Previously identified and sequenced (PMID: 10094695 Nowak-Thompson et al. 1999, PMID: 16162666 Dorrestein et al. 2005); identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820.	Flavin reductase; Identified by match to protein family HMM PF03358.	0.402
pltA	pltM	PFL_2787	PFL_2784	FADH2-dependent halogenase PltA; Previously identified and sequenced (PMID: 10094695 Nowak-Thompson et al. 1999, PMID: 16162666 Dorrestein et al. 2005); identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820.	Halogenase PltM; Previously identified and sequenced (PMID: 10094695 Nowak-Thompson et al. 1999); identified by match to protein family HMM PF01266; match to protein family HMM PF04820.	0.460
pltA	pltZ	PFL_2787	PFL_2794	FADH2-dependent halogenase PltA; Previously identified and sequenced (PMID: 10094695 Nowak-Thompson et al. 1999, PMID: 16162666 Dorrestein et al. 2005); identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820.	Transcriptional regulator PltZ; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005); identified by similarity to GB:AAQ90179.1; match to protein family HMM PF00440; match to protein family HMM PF09209.	0.408
pltM	PFL_3289	PFL_2784	PFL_3289	Halogenase PltM; Previously identified and sequenced (PMID: 10094695 Nowak-Thompson et al. 1999); identified by match to protein family HMM PF01266; match to protein family HMM PF04820.	Flavin reductase; Identified by match to protein family HMM PF03358.	0.406
pltM	PFL_3609	PFL_2784	PFL_3609	Halogenase PltM; Previously identified and sequenced (PMID: 10094695 Nowak-Thompson et al. 1999); identified by match to protein family HMM PF01266; match to protein family HMM PF04820.	Flavin reductase-like protein; Identified by similarity to SP:P54990; match to protein family HMM PF01613.	0.436
pltM	pltA	PFL_2784	PFL_2787	Halogenase PltM; Previously identified and sequenced (PMID: 10094695 Nowak-Thompson et al. 1999); identified by match to protein family HMM PF01266; match to protein family HMM PF04820.	FADH2-dependent halogenase PltA; Previously identified and sequenced (PMID: 10094695 Nowak-Thompson et al. 1999, PMID: 16162666 Dorrestein et al. 2005); identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820.	0.460
pltZ	PFL_3289	PFL_2794	PFL_3289	Transcriptional regulator PltZ; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005); identified by similarity to GB:AAQ90179.1; match to protein family HMM PF00440; match to protein family HMM PF09209.	Flavin reductase; Identified by match to protein family HMM PF03358.	0.406

page 1 of 2

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2023

Credits

Access

Info

About