STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_3546Conserved hypothetical protein. (314 aa)    
Predicted Functional Partners:
PFL_0316
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
 0.734
PFL_3542
Identified by match to protein family HMM PF01569.
 
     0.718
PFL_1106
Response regulator/EAL domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563.
  
 
 0.646
PFL_3543
Conserved hypothetical protein.
       0.640
PFL_3544
Conserved hypothetical protein.
       0.640
PFL_3545
Conserved hypothetical protein.
       0.627
PFL_3541
Fatty acid desaturase domain protein; Identified by match to protein family HMM PF00487.
 
     0.626
PFL_6197
Dual specificity phosphatase, catalytic domain protein; Identified by match to protein family HMM PF00782; match to protein family HMM PF01569.
  
 
 0.619
PFL_6196
Alpha/beta hydrolase fold family; Identified by match to protein family HMM PF00561.
  
     0.601
PFL_0007
Conserved hypothetical protein; Identified by similarity to GB:CAD16972.1.
  
     0.567
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.