STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_3557Transcriptional regulator, GntR family/amidohydrolase family protein; Identified by similarity to PIR:AH0235; match to protein family HMM PF00392; match to protein family HMM PF04909; match to protein family HMM PF07729. (536 aa)    
Predicted Functional Partners:
glcC
Glc operon transcriptional activator; Identified by similarity to SP:P52072; match to protein family HMM PF00392; match to protein family HMM PF07729.
 
     0.607
PFL_3673
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
 
     0.606
PFL_3556
Transporter, major facilitator family; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.
       0.539
vanR
Transcriptional regulator VanR; Identified by similarity to GB:AAC27105.1; match to protein family HMM PF00392; match to protein family HMM PF07729.
 
   
 0.523
PFL_3555
Identified by match to protein family HMM PF04909.
 
    
0.477
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.