STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_3710Conserved hypothetical protein. (135 aa)    
Predicted Functional Partners:
PFL_3708
Alanine racemase domain protein; Identified by match to protein family HMM PF01168.
 
  
 0.911
PFL_3709
Oxidoreductase, FAD-linked; Identified by match to protein family HMM PF01565; match to protein family HMM PF04030; match to protein family HMM TIGR01409; match to protein family HMM TIGR01679.
 
    0.869
PFL_5078
Putative ubiquinol-cytochrome c reductase, cytochrome c1; Identified by similarity to SP:P23135.
 
  
 0.734
PFL_0084
Cytochrome c4; Identified by similarity to SP:Q52369; match to protein family HMM PF00034.
 
   
 0.700
ctaC
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
  
 0.644
PFL_0068
Putative cytochrome oxidase assembly protein; Identified by match to protein family HMM PF02628.
 
     0.633
petA
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
  
 0.606
ccoP_2
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.565
ccoP_1
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.558
PFL_3403
Identified by match to protein family HMM PF00034.
 
   
 0.530
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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