STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_3968Conserved hypothetical protein. (309 aa)    
Predicted Functional Partners:
bkdA2
2-oxoisovalerate dehydrogenase E1 component, beta subunit; Identified by similarity to SP:P09061; match to protein family HMM PF02779; match to protein family HMM PF02780.
     
  0.800
bkdA1
2-oxoisovalerate dehydrogenase E1 component, alpha subunit; Identified by similarity to SP:P09060; match to protein family HMM PF00676.
     
  0.800
hopJ
Type III effector protein HopJ; Identified by match to protein family HMM PF08888.
  
     0.503
fadH
2,4-dienoyl-CoA reductase; Identified by similarity to SP:P42593; match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF03486; match to protein family HMM PF07992.
       0.487
miaE
tRNA-(ms[2]io[6]A)-hydroxylase; Identified by similarity to SP:Q08015; match to protein family HMM PF06175.
  
     0.446
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.