STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_4061Conserved hypothetical protein. (176 aa)    
Predicted Functional Partners:
PFL_0468
Transporter, CPA2 family; Identified by match to protein family HMM PF00999.
  
     0.664
PFL_5415
Putative membrane protein; Identified by match to protein family HMM PF06790.
  
     0.572
PFL_1677
Conserved hypothetical protein.
  
     0.556
pasA
PasA protein; Identified by similarity to GB:AAZ03608.1.
  
     0.519
fliK
Flagellar hook-length control protein FliK; Identified by match to protein family HMM PF02120.
  
     0.518
PFL_4062
Conserved hypothetical protein.
       0.490
PFL_5874
Conserved hypothetical protein.
  
     0.457
PFL_5780
Putative alginate lyase; Identified by match to protein family HMM PF08787.
  
     0.454
PFL_5750
Conserved hypothetical protein.
  
     0.451
PFL_4396
Conserved hypothetical protein; Identified by match to protein family HMM PF08238.
  
     0.440
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.