STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uraH_1Hydroxyisourate hydrolase; Identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. (117 aa)    
Predicted Functional Partners:
uraD
OHCU decarboxylase; Identified by similarity to SP:Q45697; match to protein family HMM PF09349; match to protein family HMM TIGR03164.
 
 0.997
PFL_5744
Identified by match to protein family HMM PF00576.
  
  
 
0.918
uraH_2
Hydroxyisourate hydrolase; Identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
  
  
 
0.915
PFL_4366
Putative urate catabolism protein; Identified by match to protein family HMM PF01522; match to protein family HMM TIGR03212.
 
    0.841
PFL_4370
Membrane protein, DUF989 family; Identified by match to protein family HMM PF06181.
 
  
 0.809
xdhB
Xanthine dehydrogenase, molybdopterin binding subunit; Identified by similarity to GB:CAA04470.2; match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR02965.
 
  
 0.790
guaD
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
   
 0.775
xdhA
Xanthine dehydrogenase, small subunit; Identified by similarity to GB:CAA04469.1; match to protein family HMM PF00111; match to protein family HMM PF00941; match to protein family HMM PF01799; match to protein family HMM PF03450; match to protein family HMM TIGR02963.
 
     0.735
xdhC
Xanthine dehydrogenase accessory protein XdhC; Identified by similarity to GB:CAB41849.1; match to protein family HMM PF02625; match to protein family HMM TIGR02964.
 
     0.732
PFL_0724
Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
 
   
 0.569
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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