STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_4667Conserved hypothetical protein. (208 aa)    
Predicted Functional Partners:
PFL_4668
Conserved hypothetical protein.
 
     0.953
PFL_4666
Conserved hypothetical protein; Identified by match to protein family HMM TIGR03764.
 
     0.925
PFL_4669
Integrating conjugative element protein, PFL_4669 family; Identified by similarity to GB:AAP84222.1; match to protein family HMM PF08900; match to protein family HMM TIGR03761.
 
     0.802
PFL_4671
Putative single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621.
 
     0.801
PFL_6255
Conserved hypothetical protein.
 
     0.794
traI
Integrating conjugative element relaxase, PFGI-1 class; Identified by match to protein family HMM PF07514; match to protein family HMM PF07515; match to protein family HMM TIGR03760.
 
     0.786
PFL_4706
Conjugative transfer ATPase, PFL_4706 family; Identified by match to protein family HMM TIGR03744.
  
   
 0.785
traD
Conjugative coupling factor TraD, PFGI-1 class; Identified by match to protein family HMM TIGR03754.
  
   
 0.781
PFL_4684
Conserved hypothetical protein.
 
     0.778
pilL
Putative type IV pilus biogenesis protein PilL; Identified by similarity to GB:AAP84211.1; match to protein family HMM TIGR03748.
  
     0.774
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.