STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_4683Putative pilM protein; Identified by similarity to GB:AAP22535.1. (146 aa)    
Predicted Functional Partners:
pilV
Type IV pilus biogenesis protein PilV; Identified by similarity to GB:ABJ13849.1; match to protein family HMM PF04917.
     
 0.830
PFL_4681
Twitching motility protein; Identified by match to protein family HMM PF00437.
     
 0.818
pilS
Type IV pilus biogenesis protein PilS; Identified by similarity to GB:AAL05523.1; match to protein family HMM PF08805.
     
 0.792
PFL_4679
Type IV pilus biogenesis protein; Identified by match to protein family HMM PF00482.
     
 0.749
pilN-2
Type IV pilus protein, PilN; Identified by similarity to GB:AAP22528.1; match to protein family HMM PF00263; match to protein family HMM PF07655; match to protein family HMM TIGR02520.
     
 0.743
pilL
Putative type IV pilus biogenesis protein PilL; Identified by similarity to GB:AAP84211.1; match to protein family HMM TIGR03748.
     
 0.732
pilQ-2
Pilus assembly protein PilQ; Identified by match to protein family HMM PF00437.
     
 0.732
pilO_1
Type IV pilus biogenesis protein PilO; Identified by similarity to GB:ABJ13843.1.
       0.652
pilP_2
Type IV pilus biogenesis protein PilP; Identified by similarity to GB:ABR13429.1; match to protein family HMM TIGR03021.
       0.642
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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