STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_4689Conserved hypothetical protein; Identified by similarity to GB:AAP22547.1. (479 aa)    
Predicted Functional Partners:
PFL_4690
Conserved hypothetical protein; Identified by similarity to GB:AAP84188.1.
     0.906
PFL_4693
Integrating conjugative element protein, PFL_4693 family; Identified by match to protein family HMM TIGR03759.
 
     0.832
PFL_4695
Integrating conjugative element protein, PFL_4695 family; Identified by similarity to GB:AAP22559.1; match to protein family HMM TIGR03765.
 
     0.830
traD
Conjugative coupling factor TraD, PFGI-1 class; Identified by match to protein family HMM TIGR03754.
 
     0.817
PFL_4697
Integrating conjugative element membrane protein, PFL_4697 family; Identified by match to protein family HMM TIGR03747.
 
     0.817
PFL_4694
Conserved hypothetical protein.
 
     0.804
PFL_4706
Conjugative transfer ATPase, PFL_4706 family; Identified by match to protein family HMM TIGR03744.
 
     0.797
PFL_4704
Integrating conjugative element protein, PFL_4704 family; Identified by similarity to GB:AAP22570.1; match to protein family HMM TIGR03749.
 
     0.796
PFL_6233
Conjugative transfer region lipoprotein, TIGR03751 family; Identified by match to protein family HMM TIGR03751.
 
     0.796
PFL_4700
Integrative conjugative element protein, RAQPRD family; Identified by match to protein family HMM PF09686; match to protein family HMM TIGR01690.
 
     0.795
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.