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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_4792Conserved hypothetical protein. (387 aa)    
Predicted Functional Partners:
PFL_4791
Putative membrane protein.
 
    0.968
PFL_4794
Conserved hypothetical protein; Identified by match to protein family HMM PF01882.
 
    0.968
PFL_4789
RDD domain protein; Identified by match to protein family HMM PF06271.
 
    0.964
PFL_4790
Integral membrane protein; Identified by match to protein family HMM PF01944.
 
    0.963
PFL_4793
ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.
 
    0.838
PFL_4273
Conserved hypothetical protein.
  
     0.722
PFL_5614
Conserved hypothetical protein; Identified by match to protein family HMM PF05656.
 
     0.687
PFL_5780
Putative alginate lyase; Identified by match to protein family HMM PF08787.
  
     0.681
PFL_3083
Putative lipopolysaccharide biosynthesis protein.
  
     0.664
PFL_0468
Transporter, CPA2 family; Identified by match to protein family HMM PF00999.
  
     0.629
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.