STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icmPInsulin-cleaving metalloproteinase outer membrane protein; Identified by similarity to GB:AAG07758.1; match to protein family HMM PF09375. (446 aa)    
Predicted Functional Partners:
PFL_4829
Conserved hypothetical protein; Identified by match to protein family HMM PF06537.
 
    0.961
PFL_4830
Lipoprotein, imelysin family; Identified by match to protein family HMM PF09375.
 
  
 0.931
PFL_4831
Conserved hypothetical protein; Identified by match to protein family HMM PF07433.
 
    0.875
PFL_4858
Putative bacterioferritin-associated ferredoxin; Identified by similarity to SP:P0AE56; match to protein family HMM PF04324.
  
  
 0.728
PFL_5964
Ferric iron ABC transporter, FeT family, periplasmic ferric iron-binding protein; Identified by match to protein family HMM PF01547.
  
    0.699
PFL_0931
Conserved hypothetical protein.
   
    0.645
fbpA
Iron ABC transporter, periplasmic iron-binding protein; Identified by similarity to SP:P35755; match to protein family HMM PF01547.
   
    0.590
fbpA-2
iron(III) ABC transporter, periplasmic iron(III)-binding protein; Identified by similarity to SP:P21408; match to protein family HMM PF01547.
   
    0.590
PFL_4827
Diguanylate cyclase (GGDEF) domain/cyclic diguanylate phosphodiesterase (EAL) domain lipoprotein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
     
 0.587
cumA
Multicopper oxidase, CumA; Identified by similarity to GB:ABY96941.1; match to protein family HMM PF07731; match to protein family HMM PF07732.
 
     0.459
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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