Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PFL_4875Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (633 aa)    
Predicted Functional Partners:
PFL_4876
Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728.
 
 0.993
glpM
Membrane protein GlpM; Identified by similarity to SP:P52112; match to protein family HMM PF06942.
 
    0.786
dctD
C4-dicarboxylate transport transcriptional regulatory protein DctD; Identified by similarity to SP:P13632; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954.
 
 
 0.680
PFL_0300
Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728.
 
 
 0.675
gltJ
Glutamate/aspartate ABC transporter, permease protein GltJ; Identified by similarity to SP:P0AER3; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
  
 0.636
gltK
Glutamate/aspartate ABC transporter, permease protein GltK; Identified by similarity to SP:P0AER5; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
  
 0.620
PFL_1106
Response regulator/EAL domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563.
  
 
 0.609
gltI
Glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein GltI; Identified by similarity to SP:P37902; match to protein family HMM PF00497.
 
   
 0.604
PFL_1105
Sensory box histidine kinase/response regulator; Identified by similarity to SP:P16575; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229.
 
 
 0.546
PFL_2164
DNA-binding response regulator, LuxR family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281.
 
 
 0.508
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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