STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_5132Putative lipoprotein. (194 aa)    
Predicted Functional Partners:
PFL_0521
Identified by match to protein family HMM PF02585.
  
     0.737
mucA
Sigma factor AlgU negative regulatory protein MucA; Identified by similarity to GB:AAK94007.1; match to protein family HMM PF03872; match to protein family HMM PF03873.
  
     0.700
algK
Alginate biosynthesis protein AlgK; Identified by similarity to GB:AAC38141.1; match to protein family HMM PF08238.
  
     0.689
PFL_1185
Outer membrane protein, Skp family; Identified by similarity to SP:P31519; match to protein family HMM PF03938.
  
     0.689
PFL_4782
Conserved hypothetical protein.
  
     0.687
PFL_4017
Peptidase propeptide and YpeB domain protein; Identified by match to protein family HMM PF03413.
  
     0.686
PFL_1768
Conserved hypothetical protein.
  
     0.679
PFL_4397
Conserved hypothetical protein.
  
     0.670
ttg2D
Toluene tolerance protein Ttg2D; Identified by similarity to GB:AAD17960.1; match to protein family HMM PF05494.
  
     0.669
PFL_1163
Conserved hypothetical protein.
  
     0.669
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.