STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_5636Polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (274 aa)    
Predicted Functional Partners:
PFL_5637
Polyamine ABC transporter, permease protein; Identified by similarity to SP:P31135; match to protein family HMM PF00528.
 
 0.998
PFL_0333
Polyamine/opine/phosphonate ABC transporter, POPT family, permease protein; Identified by match to protein family HMM PF00528.
  
 0.974
PFL_5638
Polyamine ABC transporter, periplasmic polyamine-binding protein; Identified by match to protein family HMM PF01547.
 
  
 0.914
potA-2
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
 0.914
PFL_5177
Polyamine ABC transporter, periplasmic polyamine-binding protein; Identified by match to protein family HMM PF01547.
  
 0.864
PFL_2951
Periplasmic putrescine-binding protein; Identified by similarity to GB:AAK15488.1; match to protein family HMM PF01547.
  
 0.848
PFL_2704
Extracellular solute-binding protein, PotD/PotF family; Identified by match to protein family HMM PF01547.
 
  
 0.847
PFL_3469
Extracellular solute-binding protein; Identified by similarity to SP:P44731; match to protein family HMM PF01547.
 
  
 0.844
PFL_5175
Polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
0.826
potA
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
 0.820
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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