STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potF1Putrescine ABC transporter, periplasmic putrescine-binding protein; Identified by similarity to GB:AAK15487.1; match to protein family HMM PF01547. (370 aa)    
Predicted Functional Partners:
potG
Putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.988
potI
Putrescine ABC transporter, permease protein; Identified by similarity to SP:P0AFL1; match to protein family HMM PF00528.
 
 0.981
potH
Putrescine ABC transporter, permease protein; Identified by similarity to SP:P31135; match to protein family HMM PF00528.
 
 
 0.979
potI2
Putrescine ABC transporter, permease protein; Identified by similarity to SP:P0AFL1; match to protein family HMM PF00528.
 
 0.972
potH2
Putrescine ABC transporter, permease protein; Identified by similarity to SP:P31135; match to protein family HMM PF00528.
 
 
 0.969
potG2
Putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.965
potF2
Putrescine ABC transporter, periplasmic putrescine-binding protein; Identified by similarity to GB:AAK15488.1; match to protein family HMM PF01547.
 
 
 
0.949
PFL_5176
Polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.909
PFL_5175
Polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
  
 0.845
PFL_0333
Polyamine/opine/phosphonate ABC transporter, POPT family, permease protein; Identified by match to protein family HMM PF00528.
 
  
 0.828
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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