STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_5943Identified by match to protein family HMM PF01928. (455 aa)    
Predicted Functional Partners:
PFL_4397
Conserved hypothetical protein.
  
     0.674
PFL_0521
Identified by match to protein family HMM PF02585.
  
     0.673
PFL_1163
Conserved hypothetical protein.
  
     0.660
algK
Alginate biosynthesis protein AlgK; Identified by similarity to GB:AAC38141.1; match to protein family HMM PF08238.
  
     0.646
PFL_1185
Outer membrane protein, Skp family; Identified by similarity to SP:P31519; match to protein family HMM PF03938.
  
 
   0.641
ndpA_1
Nucleoid-associated protein NdpA; Identified by match to protein family HMM PF04245.
  
   
 0.626
algG
poly(beta-D-mannuronate) C5 epimerase AlgG; Identified by similarity to SP:Q51371.
  
     0.614
ndpA_2
Nucleoid-associated protein NdpA; Identified by match to protein family HMM PF04245.
  
   
 0.606
PFL_4782
Conserved hypothetical protein.
  
     0.595
argE_2
Acetylornithine deacetylase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01892.
       0.571
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.