STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
orf1DNA-damage-inducible gene. (93 aa)    
Predicted Functional Partners:
repA-3
Replication protein.
 
     0.895
orf41
Hypothetical protein.
 
     0.825
orf39
Hypothetical protein.
  
     0.760
traA
Nickase.
 
   
 0.729
repB
Replication protein.
     
 0.709
orf6
Hypothetical protein.
      
 0.709
orf9
Hypothetical protein.
      
 0.708
orf5
Hypothetical protein.
      
 0.707
orf8
Hypothetical protein.
      
 0.706
orf14
Hypothetical protein.
      
 0.702
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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