STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpk1Two-component system histidine protein kinase; sensor protein. (624 aa)    
Predicted Functional Partners:
rrp1
Two-component system response regulator.
 0.999
lp_0038
Regulator of two-component system, YycH family.
 
  
 0.950
lp_0039
Regulator of two-component system, YycI family.
 
  
 0.931
rrp11
Two component system response regulator.
 
 0.852
rrp7
Two-component system response regulator.
 
 0.844
rrp5
Two-component system response regulator.
 
 0.838
rrp3
Two-component system response regulator,phosphate transport regulon.
 
 0.806
lp_0041
Zn-dependent hydrolase, beta-lactamase superfamily.
  
  
 0.775
rrp2
Two-component system response regulator.
 
 0.650
htrA
Serine protease HtrA.
 
  
 0.621
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.